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NEW Molecular Microbial Ecology of the Rhizosphere by Frans J. de Bruijn Hardcov

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9781118296172

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Description
Molecular Microbial Ecology of the Rhizosphere covers current kwledge on the molecular basis of plant-microbe interactions in the rhizosphere. Also included in the book are both reviews and research-based chapters describing experimental materials and methods. Edited by a leader in the field, with contributions from authors around the world, Molecular Microbial Ecology of the Rhizosphere brings together the most up-to-date research in this expanding area, and will be a valuable resource for molecular microbiologists and plant soil scientists, as well as upper level students in microbiology, ecology, and agriculture.

Key Features
Author(s)Frans J. de Bruijn
PublisherJohn Wiley & Sons Inc
Date of Publication03/05/2013
LanguageEnglish
FormatHardback
ISBN-101118296176
ISBN-139781118296172
SubjectLife Sciences: General

Publication Data
Place of PublicationNew York
Country of PublicationUnited States
ImprintJohn Wiley & Sons Inc
Content NoteIllustrations

Dimensions
Weight4080 g
Width220 mm
Height264 mm
Spine66 mm

Editorial Details
Contained items statement2 Hardbacks

Description
Table Of ContentsVOLUME ONE Chapter 1. Introduction Frans J. de Bruijn Section 1 Focus Chapters Chapter 2. Using genomics to unveil bacterial determinants of rhizosphere life style Maria Ramos-Gonzalez Chapter 3. Benefits of breeding crops for yield response to soil organisms Philip White Chapter 4. Microbial interactions in the Rhizosphere Jose-Miguel Barea Chapter 5. Culture-independent molecular approaches to microbial ecology in soil and the rhizosphere Penny Hirsch Chapter 6. Exploiting new systems-based strategies to elucidate plant-bacterial interactions in the rhizosphere Fergal O'Gara Chapter 7. Combining molecular microbial ecology with ecophysiology and plant genetics for a better understanding of plant-microbial communities interactions in the rhizosphere Philippe Lemanceau and Christoph Mougel Chapter 8. Microbially Mediated Plant Functional Traits Maren L. Friesen Section 2 Plant-mediated Structuring of Bacterial Communities in the Rhizosphere Chapter 9. Unraveling the shed of unexplored rhizosphere microbial diversity Chandra Nautiyal Chapter 10. Analysis of bacterial communities in the rhizosphere- what do advanced molecular tools tell us about the ecology of interactions? Jan Dirk van Elsas Chapter 11. Challenges in assessing links between root exudates and the structure and function of soil microbial communities Leo Condron Chapter 12. Root secretions: interrelating genes and molecules to microbial associations. Is it all that simple? Harsh Bais Chapter 13. The use of stable isotope labelling and compound-specific analysis of microbial phospholipid fatty acids to quantify the influences of rhizodeposition on microbial community structure and function Eric Paterson Chapter 14. Metarhizobium robertsii, a rhizosphere-competent insect pathogen that expresses a specific subset of genes in plant root exudate Monica Pava-Ripoll Chapter 15. Shaping of microbial community structure and function in the rhizosphere by four diverse plant species Wafa Achouak Chapter 16. Exploration of hitherto-uncultured bacteria from the rhizosphere Leo van Overbeek Chapter 17. The use of molecular methods to assess chemotactic-competent bacterial populations in the rhizosphere Alison Buchan Chapter 18. Assessment of rice root-associated bacteria Pablo Hardoim Chapter 19. Phylogenetic analysis of Azospirillum species isolated from the rhizosphere of field grown wheat based on genetic and phenotypic features Panagiotis Katinakis Chapter 20. Influence of intercropping and intercropping plus rhizobial inoculation on microbial activity and community composition in rhizosphere of alfalfa (Medicago sativa L.) and siberian wild rye (Elymus sibericus L.) Hong Li Yuan Chapter 21. Root exudates, crucial for molecular understanding of interactions in the rhizosphere Nicholas Uren Chapter 22. Do root exudates exert more influence on rhizosphere bacterial community structure than other rhizodeposits? Penny Hirsch Section 3 Plant Genetics and Rhizobacterial Communities Chapter 23. Arabidopsis thaliana as model in the study of root-inhabiting bacteria Paul Schulze-Lefert Chapter 24. Genetic and developmental control of rhizosphere bacterial communities Shirley Micallef and Adan Colon-Carmona Chapter 25. Arabidopsis thaliana: a useful but limited mosel to investigate stress impacts on rhizosphere community composition and function Gordon Wolfe Chapter 26. Medicago truncatula root proteomics Frank Colditz Section 4 Hormones and other Signals and Rhizomicrobes Chapter 27. Control of the cooperation.between plant growth-promoting rhizobacteria and crops by rhizosphere signals Yvan Moenne-Loccoz and Claire Prigent Combaret Chapter 28. Small molecules involved in transkingdom communication between plants and rhizobacteria Jose Lopez-Bucio Chapter 29. Bacterial biosynthesis of indole-acetic acid: Signal messenger service Sheela Srivastava Chapter 30. Fixing and non-fixing Rhizobia affect Arabidopsis root architecture by inte

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Molecular Microbial Ecology of the Rhizosphere (English)

by Frans J. de Bruijn

Format Hardcover

Condition Brand New

Language English

Molecular Microbial Ecology of the Rhizosphere covers current knowledge on the molecular basis of plant-microbe interactions in the rhizosphere. Also included in the book are both reviews and research-based chapters describing experimental materials and methods.

Publisher Description

Molecular Microbial Ecology of the Rhizosphere covers current knowledge on the molecular basis of plant-microbe interactions in the rhizosphere. Also included in the book are both reviews and research-based chapters describing experimental materials and methods. Edited by a leader in the field, with contributions from authors around the world, Molecular Microbial Ecology of the Rhizosphere brings together the most up-to-date research in this expanding area, and will be a valuable resource for molecular microbiologists and plant soil scientists, as well as upper level students in microbiology, ecology, and agriculture.

Table of Contents

VOLUME ONE Chapter 1. Introduction Frans J. de Bruijn Section 1 Focus Chapters Chapter 2. Using genomics to unveil bacterial determinants of rhizosphere life style Maria Ramos-Gonzalez Chapter 3. Benefits of breeding crops for yield response to soil organisms Philip White Chapter 4. Microbial interactions in the Rhizosphere Jose-Miguel Barea Chapter 5. Culture-independent molecular approaches to microbial ecology in soil and the rhizosphere Penny Hirsch Chapter 6. Exploiting new systems-based strategies to elucidate plant-bacterial interactions in the rhizosphere Fergal O'Gara Chapter 7. Combining molecular microbial ecology with ecophysiology and plant genetics for a better understanding of plant-microbial communities interactions in the rhizosphere Philippe Lemanceau and Christoph Mougel Chapter 8. Microbially Mediated Plant Functional Traits Maren L. Friesen Section 2 Plant-mediated Structuring of Bacterial Communities in the Rhizosphere Chapter 9. Unraveling the shed of unexplored rhizosphere microbial diversity Chandra Nautiyal Chapter 10. Analysis of bacterial communities in the rhizosphere- what do advanced molecular tools tell us about the ecology of interactions? Jan Dirk van Elsas Chapter 11. Challenges in assessing links between root exudates and the structure and function of soil microbial communities Leo Condron Chapter 12. Root secretions: interrelating genes and molecules to microbial associations. Is it all that simple? Harsh Bais Chapter 13. The use of stable isotope labelling and compound-specific analysis of microbial phospholipid fatty acids to quantify the influences of rhizodeposition on microbial community structure and function Eric Paterson Chapter 14. Metarhizobium robertsii, a rhizosphere-competent insect pathogen that expresses a specific subset of genes in plant root exudate Monica Pava-Ripoll Chapter 15. Shaping of microbial community structure and function in the rhizosphere by four diverse plant species Wafa Achouak Chapter 16. Exploration of hitherto-uncultured bacteria from the rhizosphere Leo van Overbeek Chapter 17. The use of molecular methods to assess chemotactic-competent bacterial populations in the rhizosphere Alison Buchan Chapter 18. Assessment of rice root-associated bacteria Pablo Hardoim Chapter 19. Phylogenetic analysis of Azospirillum species isolated from the rhizosphere of field grown wheat based on genetic and phenotypic features Panagiotis Katinakis Chapter 20. Influence of intercropping and intercropping plus rhizobial inoculation on microbial activity and community composition in rhizosphere of alfalfa (Medicago sativa L.) and siberian wild rye (Elymus sibericus L.) Hong Li Yuan Chapter 21. Root exudates, crucial for molecular understanding of interactions in the rhizosphere Nicholas Uren Chapter 22. Do root exudates exert more influence on rhizosphere bacterial community structure than other rhizodeposits? Penny Hirsch Section 3 Plant Genetics and Rhizobacterial Communities Chapter 23. Arabidopsis thaliana as model in the study of root-inhabiting bacteria Paul Schulze-Lefert Chapter 24. Genetic and developmental control of rhizosphere bacterial communities Shirley Micallef and Adan Colon-Carmona Chapter 25. Arabidopsis thaliana: a useful but limited mosel to investigate stress impacts on rhizosphere community composition and function Gordon Wolfe Chapter 26. Medicago truncatula root proteomics Frank Colditz Section 4 Hormones and other Signals and Rhizomicrobes Chapter 27. Control of the cooperation.between plant growth-promoting rhizobacteria and crops by rhizosphere signals Yvan Moenne-Loccoz and Claire Prigent Combaret Chapter 28. Small molecules involved in transkingdom communication between plants and rhizobacteria Jose Lopez-Bucio Chapter 29. Bacterial biosynthesis of indole-acetic acid: Signal messenger service Sheela Srivastava Chapter 30. Fixing and non-fixing Rhizobia affect Arabidopsis root architecture by interfering with the auxin signalling pathway Bruno Touraine Chapter 31. Terpene production by bacteria and its involvement in plant growth promotion, stress alleviation and yield increase Ruben Bottini Chapter 32 Rapid identification of plant growth promoting rhizobacteria using an agar plate co-cultivation system with Arabidopsis Jose Lopez-Bucio Chapter 33. Strigolactone biosynthesis and biology Harro Bouwmeester Chapter 34. Chemistry of strigolactones: why and how do plants produce so many strigolactones? Koichi Yoneyama Chapter 35. Strigolactones: crucial cues in the rhizosphere Juan Lopez-Raez Section 5 Endophytes Chapter 36. Bacterial endophytes: Who and where and what they are doing there Natalia Malfanova and Gabriele Berg Chapter 37. Properties of bacterial endophytes leading to maximized host fitness Jan Dirk van Elsas Chapter 38. DNA-Based stable isotope probing for identifying active bacterial endophytes in potato Frank Rasche Chapter 39. Visualization of niches of colonization of Firmicuyes with Bacillus spp in the rhizosphere, rhizoplane and endorhiza of grapevine plants at flowering stage of development by FISH microscopy Stephane Compant; Angela Sessitsch Chapter 40. The poplar endophyte Pseudomonas putida W619 as a key to a succesfull phytoremediation of volatile organic contaminants Nele Weyens Chapter 41. NifH gene expression and nitrogen fixation by diazotrophic endophytes in sugarcane and sweet potato Tadakatsu Yoneyama Chapter 42. Surveying diverse Zea seed for populations of bacterial endophytes Manish Raizada Robert Johnston Monje Section 6 Symbiotic Plant-Microbe Interactions Chapter 43. Molecular mechanisms governing arbuscular mycorrhiza development and function Martin Parniske Chapter 44. Diversity and evolution of nitrogen-fixing legume symbionts Catharine Masson Chapter 45. Lipochitooligosaccharide perception and the basis of partner recognition in root endosymbioses Julie Cullimore and Clare Gough Chapter 46. Rhizobial genetic repertoire to inhabit legume- and non-legume rhizospheres Esperanza Martinez Romero Chapter 47. Who is controlling whom within the ectomycorrhizal symbiosis: Insights from genomic and functional analyses Francis Martin and Claire Fourrey Chapter 48. Role of carotenoid metabolism in the arbuscular mycorrhizal symbiosis Michael Walter Chapter 49. Bacterial colonization of the arbuscular mycorrhizal.fungal hyposphere Tanja Scheublin Chapter 50. Role of Quorum Sensing in the Sinorhizobium meliloti-Alfalfa Symbiosis Juan Gonzalez Chapter 51. Roles for flavonoids in symbiotic root-rhizosphere interactions Ulrike Mathesius Chapter 52. Exopolysaccharides and Nodule Invasion in the Sinorhizobium meliloti-Alfalfa Symbiosis Juan Gonzalez VOLUME TWO Section 7 PGPR, Biocontrol and Disease-Suppressive Bacteria Chapter 53. Plant growth promotion by microbes Ben Lugtenberg and Gabriele Berg Chapter 54. Microbial control of plant root diseases Ben Lugtenberg and Gabriele Berg Chapter 55. Biocontrol and Osmoprotection for Plants under Saline Conditions Gabriela Berg Chapter 56. Genetics and evolution of 2,4 di acetylphloroglucinol synthesis in Pseudomonas fluorescence John Morrissey Chapter 57. Suppression of crown gall disease by rhizosphere bacteria and Agrobacterium-specific bacteriophages Leonid Chernin Chapter 58. Molecular-based strategies to exploit the inorganic phosphate solubilization ability of Pseudomonas in sustainable agriculture Fergal O'Gara Chapter 59. The biocontrol bacterium Pseudomonas fluoresens Pf29Arp strain affects the pathogenesis-related gene expression of the take-all fungus Gaeumannomyces graminis var. tritici on wheat roots Stephanie Daval Chapter 60. Marker-Assisted Selection of Novel Bacteria Contributing to Soilborne Plant Disease Suppression Brian McSpadden Gardener Chapter 61. Combined effects of wheat roots and pathogenic fungus Gaeumannomyces graminis vartritici on Gene Expression of the biocontrol bacterium Pseudomonas fluorescens Pf29Arp Alain Sarniguet Chapter 62. Biocontrol of Tree Root Diseases Francisco Cazorla and Clara Piego Chapter 63. Plant growth modulation by bacterial volatiles: a focus on Burkholderia species Laure Weisskopf Chapter 64. Plant growth promoting microorganisms: The road from an academically promising result to a commercial product Faina Kamilova and H. Mikkelsen Chapter 65. The effect of agricultural practices on resident soil microbial communities: Focus on biocontrol and biofertilization Susana Castro-Sowinski Section 8 Biofilm Formation and Attachment to Roots Chapter 66. Biofilm Formation in the Rhizosphere: Multispecies Interactions and Implications for Plant Growth Ann Hirsch Chapter 67. Probiotics for plants: Rhizospheric microbiome and plant fitness Harsh Bais Chapter 68. Motility, biofilm formation and rhizosphere colonization by Pseudomonas fluorescens F113 Rafael Rivilla and Marta Martin Chapter 69. CMEIAS: An improved computing technology for quantitative image analysis of root colonization by rhizobacteria In Situ at single-cell resolution Frank Dazzo and Youssef Yanni Section 9 Quorum Sensing and Signalling Chapter 70. Understanding root-microbiome interactions Jorge Vivanco Chapter 71. An interkingdom signaling mechanism in rhizosphere Pseudomonas Vittorio Venturi Chapter 72. N-Acylhomoserine-lactone quorum-sensing signalling in phenazine and cyclic lipopeptide-producing Pseudomonas sp. CMR12 from the red cocoyam rhizosphere Monica. Hofte Chapter 73. The response of plants towards N-acyl homoserine lactones of quorum sensing active bacteria in the rhizosphere Anton Hartmann Chapter 74. In situ calling distances and high population independent N-acylhomoserine lactone- mediated communication on plant root surfaces Frank Dazzo Stephan Gantner Chapter 75. Quorum-sensing quenching by volatile organic compounds emitted by rhizosphere bacteria Leonid Chernin Chapter 76. The biological significance of the degradation of N-acylhomoserine lactones-Quorum sensing and quorum quenching in Burkholderia and Agrobacterium Kok-Gan Chan and Yves Dessaux Chapter 77. Altering Plant-Microbe Interactions Through Artificially Manipulating Bacterial Quorum Sensing Rupert Fray Chapter 78. Rhizosphere microbial communication in soil nutrient acquisition Kristen DeAngelis Chapter 79 Agony to harmony- What decides? Calcium signalling in beneficial and pathogenic plant-microbe interactions: What we can learn from the Arabidopsis/Piriformospora indica symbiosis Ralf Oelmuller Section 10 Genomic Sequencing and Screening of Genes/Promoters Activated in the Natural Environment Chapter 80 Genome transcriptome analysis and functional characterization of a nitrogen fixation island in root-associated Pseudomonas stutzeri Min Lin and Claudine Elmerich Chapter 81. Genome analysis, ecology and plant growth promotion of the endophyte Burkholderia phytofirmans strain PsJN Angela Sessitsch Chapter 82. Identification and mutational activation of niche-specific genes provides insight into regulatory networks and bacterial function in complex environments Robert Jackson Chapter 83. Comparative analysis of the complete genome sequence of the plant growth-promoting bacterium Bacillus amyloliquefaciens FZB42 Rainer Borriss Chapter 84. Genome Sequence of the Plant Growth Promoting Endophytic Bacterium Enterobacter sp. 638 Daniel van der Lelie Section 11 Marker and Reporter Genes For Plant-Host Interaction Studies Chapter 85. Approaches for the design of genetically engineered bacteria for ecological studies and biotechnological applications Humberto Ramos Chapter 86. Construction of signature-tagged mutant libraries and application to plant-symbiotic bacteria Anke Becker Chapter 87 Us e of DOPE-FISH tool to better visualize colonization of plants by beneficial bacteria? An example with Saccharothrix algeriensis NRRL B-24137 colonizing grapevine plants Stephane Compant Chapter 88. Combining rhizobox, reporter gene systems and molecular analysis to assess the effects of humic substances on plant-microbes interactions in soil rhizosphere Marco Trevisan Chapter 89. Multi-parameter flow cytometry for characterization of physiological states in Pseudomonas fluorescens DR54 biocontrol inoculants under dry formulation and long-term storage in clay carrier Jan Sorensen Chapter 90. Endophytic lifestyle of biocontrol strains of Pseudomonas spp. in olive roots Jesus Mercado-Blanco and Pilar Prieto Section 12 Phytoremediation and heavy metal tolerance in the Rhizosphere Chapter 91. Improving phytoremediation through plant associated bacteria David Dowling Chapter 92. Ecology of alkane-degrading bacteria and their interaction with the plant. Angela Sessitsch Chapter 93. Abiotic stress remediation by the arbuscular mycorrhizal symbiosis and rhizosphere bacteria /yeast interactions Rosario Azcon Chapter 94. Potentially plant growth promoting and nitrogen fixing rhizobacteria associated with pioneer plants growing on mine tailings Cesar Hernandez-Rodriguez Chapter 95. Stimulation of rhizosphere microbial communities during chemophytostabilization of a Pb-Zn mine soil George Kowalchuk and Lur Epelde Chapter 96. Arbuscular mycorrhiza in glucosinolate-containing plants: The story of the metal hyperaccumulator Thlaspi praecox (Brassicaceae) Marjana Regvar Chapter 97. Novel metal resistance genes from the rhizosphere of extreme environments: A functional metagenomics approach Jose Gonzalez-Pastor and Salvator Mirete Section 13 Climate Change Effects on Soil/Rhizosphere Microbial Communities Chapter 98. Soil warming effects on beneficial plant-microbe interactions Angela Sessitsch Stephane Compant Chapter 99. Soil respiration, climate change and the role of microbial communities. O. Roger Anderson Chapter 100. Rhizosphere responses to elevated atmospheric CO2 George Kowalchuk and Barbara Drigo Chapter 101. Applying stable isotope probing of phospholipid fatty acids and ribosomal RNA in rice fields to study the composition of the active methanotrophic bacterial communities in situ Ralph Conrad Section 14 Metagenomics and the Soil/Rhizosphere Chapter 102. Impact of mangrove roots on bacterial composition Newton Gomes Chapter 103. Prediction of an ectomycorrhizal metabolome from transcriptomic data Peter Larsen Chapter 104. Metagenomic analysis on the rhizosphere soil microbial community Takuro Shinano Chapter 105. Bacterial diversity in rhizosphere soil from antarctic vascular plants of Admiralty Bay, in maritime Antarctica Alexandre Rosado Chapter 106. Arbuscular mycorrhizal fungi throughout the year: Using massively parallel pyrosequencing to quantify spatio-temporal seasonal dynamics Alex Dumbrell Chapter 107. Transcriptomics and metatranscriptomic analysis of the response of rhizosphere bacteria to environmental change Phil Poole Chapter 108. Unraveling the rhizosphere using the CPN60 genomic marker and pyrosequencing George Lavarovits Chapter 109. Rhizosphere metatranscriptomics: Challenges and opportunities Peer Schenk Section 15 Engineering the Rhizosphere : The " Biased Rhizosphere " Concept Chapter 110. The "Biased Rhizosphere" concept and advances in the Omics era to study bacterial competitiveness and persistence in the phytosphere. Yves Dessaux and Silvia Rossbach Chapter 111. Bacterial inositol and rhizopine catabolism- a sweet ride into the host Silvia Rossbach Chapter 112. Exogenous glucosinolate produced by transgenic Arabidopsis thaliana has an impact on microbes in the rhizosphere and plant roots Odile Berge and Melanie Bressan C hapter 113. Reciprocal interactions between plants and fluorescent pseudomonads in relation to iron in the rhizosphere Philippe Lemanceau Chapter 114. Enhancement of plant-microbe interactions using rhizosphere metabolomics driven approach and its application in the removal of polychlorinated biphenyls Sanjay Swarup Section 16 Concluding Chapters Chapter 115. Rhizophagy -- a new dimension of plant-microbe interactions Chanyarat Puangfoo-Lonhienne Chapter 116. The Rhizosphere as a Reservoir for Opportunistic Human Pathogenic Bacteria Gabriele Berg and Anton Hartmann Chapter 117. Mechanisms of plant colonization by human pathogenic bacteria: an emphasis on the roots and rhizosphere Nicola Holden Chapter 118. Perspectives on the Molecular Microbial Ecology of the Rhizosphere B.J.J. Lugtenberg and Jos Raaijmakers

Review

"Edited by a leader in the field, with contributions from authors around the world, Molecular Microbial Ecology of the Rhizosphere brings together the most up-to-date research in this expanding area, and will be a valuable resource for molecular microbiologists and plant soil scientists, as well as upper level students in microbiology, ecology, and agriculture." ( Bois Et Forets Des Tropiques , 1 October 2013)

Review Text

“Edited by a leader in the field, with contributions from authors around the world, Molecular Microbial Ecology of the Rhizosphere brings together the most up-to-date research in this expanding area, and will be a valuable resource for molecular microbiologists and plant soil scientists, as well as upper level students in microbiology, ecology, and agriculture.”  (Bois Et Forets Des Tropiques, 1 October 2013)  

Details

  • ISBN1118296176
  • Title Molecular Microbial Ecology of the Rhizosphere
  • Author Frans J. de Bruijn
  • Publisher John Wiley & Sons Inc
  • Year 2013
  • ISBN-10 1118296176
  • ISBN-13 9781118296172
  • Format Hardcover
  • Imprint John Wiley & Sons Inc
  • Subtitle Two Volume Set
  • Place of Publication New York
  • Country of Publication United States
  • DEWEY 577.57
  • Language English
  • Media Book
  • Pages 1328
  • Audience Professional and Scholarly
  • Publication Date 2013-05-03
  • Short Title MOLECULAR MICROBIAL ECOLOG-2PK
  • Illustrations Illustrations
  • Dimensions220mm x 264mm x 66mm

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